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Take A Subset Of A Fastq Paired-End Sample

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Hi,

I have two paired-end fastq compressed files coming from HiSeq RNA-SEq experiment, ie., pair.1.fastq.gz and pair.2.fastq.gz.

The files are very large so I wanted to just take a few million/thousand reads from each of them (by their respective pairs) and use that file for trying/debuuging purposes.

The results should be two paired-end files, i.e., pair.test.1.fastq.gz and pair.test.2.fastq.gz.

I'd be happy to hear some suggestions on how to do this or hear about tools available, thanks!


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